CSH Protocols, Table of Contents
Primary Archive, Section 1

May 2006

Protocols

Isolation of DNA Fragments from Polyacrylamide Gels by the Crush and Soak Method
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot2936
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Ecdysone as Regulator of Inducible Gene Expression in Mammalian Cells
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3186
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Recovery of DNA from Agarose Gels: Electrophoresis onto DEAE-cellulose Membranes
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3214
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Markers for Pulsed-field Gel Electrophoresis
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3222
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Isolation of High-molecular-weight DNA from Mammalian Cells Using Formamide
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3225
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Preparation of DNA for Pulsed-field Gel Electrophoresis: Isolation of Intact DNA from Yeast
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3235
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Preparation of Double-stranded (Replicative Form) Bacteriophage M13 DNA
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3281
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Large-scale Preparation of Single-stranded and Double-stranded Bacteriophage M13 DNA
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3284
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Screening an Unamplified Cosmid Library by Hybridization: Plating the Library onto Filters
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3289
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Working with Yeast Artificial Chromosomes
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3297
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Growth of S. cerevisiae and Preparation of DNA
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3298
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Small-scale Preparations of Yeast DNA
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3299
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Construction of cDNA Libraries • Stage 4: Attachment of Linkers or Adaptors
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3310
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Removal of Cross-reactive Antibodies from Antiserum: Affinity Chromatography
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3340
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Rapid and Efficient Site-directed Mutagenesis by the Single-tube Megaprimer PCR Method
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3467
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Site-specific Mutagenesis by Overlap Extension
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3468
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Mixed Oligonucleotide-primed Amplification of cDNA (MOPAC)
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3484
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Inverse PCR
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3487
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Purification of Radiolabeled Oligonucleotides by Precipitation with Ethanol
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3490
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Rapid Isolation of Mammalian DNA
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3514
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Random Priming: Radiolabeling of Purified DNA Fragments by Extension of Random Oligonucleotides
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3542
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Random Priming: Radiolabeling of DNA by Extension of Random Oligonucleotides in the Presence of Melted Agarose
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3543
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Synthesis of Single-stranded DNA Probes of Heterogeneous Length from Bacteriophage M13 Templates
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3546
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Labeling 3' Termini of Double-stranded DNA Using the Klenow Fragment of E. coli DNA Polymerase I
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3551
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Construction of cDNA Libraries • Stage 2: Second-strand Synthesis
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3560
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Labeling of Synthetic Oligonucleotides Using the Klenow Fragment of E. coli DNA Polymerase I
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3577
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Autoradiography and Reading of Sequencing Gels
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3588
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Generation of Bidirectional Sets of Deletion Mutants by Digestion with BAL 31 Nuclease
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3589
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Expression of Cloned Genes in E. coli Using the Bacteriophage T7 Promoter
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3597
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Assay for Luciferase in Extracts of Mammalian Cells
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3642
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Exon Trapping and Amplification • Stage 5: Analysis of Clones
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3651
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Expression of Secreted Foreign Proteins Using the Alkaline Phosphatase Promoter (phoA) and Signal Sequence
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3654
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Purification of Fusion Proteins by Affinity Chromatography on Glutathione Agarose
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3655
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Preparation of Single-stranded Bacteriophage M13 DNA
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3686
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Isolation of DNA from Mammalian Cells Grown in 96-well Microtiter Plates
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3695
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Detection of DNA in Polyacrylamide Gels by Staining
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3718
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Northern Hybridization
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3723
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Purification of Radiolabeled Oligonucleotides by Size-exclusion Chromatography
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3727
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Construction of cDNA Libraries • Stage 5: Fractionation of cDNA by Gel Filtration through Sepharose CL-4B
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3730
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Exon Trapping and Amplification • Stage 2: Electroporation of the Library into COS-7 Cells
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3733
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Exon Trapping and Amplification • Stage 3: Harvesting the mRNA
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3734
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Oligonucleotide-directed Mutagenesis by Elimination of a Unique Restriction Site (USE Mutagenesis)
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3742
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DNA Transfection by Electroporation
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3751
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Detection of Protein-Protein Interactions Using the GST Fusion Protein Pulldown Technique
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3757
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Screening Expression Libraries Constructed in Bacteriophage {lambda} Vectors
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3765
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Removal of Cross-reactive Antibodies from Antiserum: Incubation with E. coli Lysate
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3767
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Preparation of Lysates Containing Fusion Proteins Encoded by Bacteriophage {lambda} Lysogens: Lysis of Bacterial Colonies
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3769
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Preparation of Lysates Containing Fusion Proteins Encoded by Bacteriophage {lambda}: Lytic Infections on Agar Plates
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3770
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Preparation of Lysates Containing Fusion Proteins Encoded by Bacteriophage {lambda}: Lytic Infections in Liquid Medium
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3771
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Removal of Cross-reactive Antibodies from Antiserum: Pseudoscreening
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3772
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Identifying DNA-binding Proteins in Bacteriophage {lambda} Expression Libraries
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3785
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Preparing Denatured Templates for Sequencing by Dideoxy-mediated Chain Termination
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3787
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Cycle Sequencing: Dideoxy-mediated Sequencing Reactions Using PCR and End-labeled Primers
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3791
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Preparation of Denaturing Polyacrylamide Gels
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3793
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Loading and Running DNA Sequencing Gels
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3794
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Preparation of Electrolyte Gradient Gels
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3795
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Dideoxy-mediated Sequencing Reactions Using Bacteriophage T7 DNA Polymerase (Sequenase)
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3801
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Dideoxy-mediated Sequencing Reactions Using the Klenow Fragment of E. coli DNA Polymerase I and Single-stranded DNA Templates
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3802
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Dideoxy-mediated Sequencing of DNA Using Taq DNA Polymerase
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3803
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Chemical Sequencing
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3804
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Preparation of Denaturing Polyacrylamide Gels Containing Formamide
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3807
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Preparation of Uracil-containing Single-stranded Bacteriophage M13 DNA
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3811
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In Vitro Mutagenesis Using Double-stranded DNA Templates: Selection of Mutants with DpnI
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3813
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Detection of Mutations by Single-strand Conformational Polymorphism
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3815
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Oligonucleotide-directed Mutagenesis of Single-stranded DNA
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3817
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Probing Protein Interactions Using GFP and FRET • Stage 3: FLIM-FRET Measurements
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3822
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The Basic Polymerase Chain Reaction
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3824
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Purification of PCR Products in Preparation for Cloning
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3825
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Removal of Oligonucleotides and Excess dNTPs from Amplified DNA by Ultrafiltration
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3826
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Blunt-end Cloning of PCR Products
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3830
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Cloning PCR Products into T Vectors
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3834
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Cloning PCR Products by Addition of Restriction Sites to the Termini of Amplified DNA
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3835
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Genetic Engineering with PCR
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3836
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Amplification of cDNA Generated by Reverse Transcription of mRNA
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3837
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Rapid Characterization of DNAs Cloned in Prokaryotic Vectors
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3840
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Long PCR
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3841
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Quantitative PCR
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3842
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Differential Display-PCR
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3844
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Synthesis of Single-stranded RNA Probes by In Vitro Transcription
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3847
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Radiolabeling of DNA Probes by the Polymerase Chain Reaction
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3848
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Labeling 3' Termini of Double-stranded DNA with Bacteriophage T4 DNA Polymerase
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3852
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End Labeling Protruding 3' Termini of Double-stranded DNA with [{alpha}-32P]Cordycepin 5'-Triphosphate or [{alpha}-32P]dideoxyATP
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3853
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Radiolabeling of Subtracted cDNA Probes by Random Oligonucleotide Extension
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3860
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Dephosphorylation of DNA Fragments with Alkaline Phosphatase
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3863
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Phosphorylation of DNA Molecules with Protruding 5'-Hydroxyl Termini
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3864
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Rapid Amplification of 3' cDNA Ends (3'-RACE)
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3865
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Synthesis of cDNA Probes from mRNA Using Random Oligonucleotide Primers
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3868
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Synthesis of Radiolabeled, Subtracted cDNA Probes Using Oligo(dT) as a Primer
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3869
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DNA Transfection Mediated by Lipofection
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3870
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Calcium-phosphate-mediated Transfection of Eukaryotic Cells with Plasmid DNAs
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3871
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Calcium-phosphate-mediated Transfection of Cells with High-molecular-weight Genomic DNA
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3872
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DNA Transfection by Biolistics
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3874
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DNA Transfection Using Polybrene
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3875
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Transfection Mediated by DEAE-Dextran: High-efficiency Method
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3876
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Phosphorylating the 5' Termini of Oligonucleotides
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3880
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Purification of Radiolabeled Oligonucleotides by Precipitation with Cetylpyridinium Bromide
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3882
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Hybridization of Oligonucleotide Probes in Aqueous Solutions: Washing in Buffers Containing Quaternary Ammonium Salts
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3883
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Empirical Measurement of Melting Temperature
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3886
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Two-hybrid Systems • Stage 2: Selecting an Interactor
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3888
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Two-hybrid Systems
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3889
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Probing Protein Interactions Using GFP and FRET • Stage 2: Cell Preparation for FLIM-FRET Analysis
Joseph Sambrook and David W. Russell
CSH Protocols; 2006; doi:10.1101/pdb.prot3893
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