Computational Biology

Introduction to Linkage Disequilibrium, the HapMap, and Imputation
Benjamin M. Neale
Cold Spring Harb Protoc; 2010; doi:10.1101/pdb.top74 [Abstract] [Full text]

Using WebGBrowse to Visualize Genome Annotation on GBrowse
Ram Podicheti and Qunfeng Dong
Cold Spring Harb Protoc; 2010; doi:10.1101/pdb.prot5392 [Abstract] [Full text]

Using the Metagenomics RAST Server (MG-RAST) for Analyzing Shotgun Metagenomes
Elizabeth M. Glass, Jared Wilkening, Andreas Wilke, Dionysios Antonopoulos, and Folker Meyer
Cold Spring Harb Protoc; 2010; doi:10.1101/pdb.prot5368 [Abstract] [Full text]

Computational Image Analysis of Cellular Dynamics: A Case Study Based on Particle Tracking
Khuloud Jaqaman and Gaudenz Danuser
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top65 [Abstract] [Full text]

Genome-Wide Association Studies
Ammar Al-Chalabi
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top66 [Abstract] [Full text]

Assessing Human Variation Data for Signatures of Natural Selection
Mike Bamshad and J. Claiborne Stephens
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top61 [Abstract] [Full text]

Laboratory Methods for High-Throughput Genotyping
Howard J. Edenberg and Yunlong Liu
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top62 [Abstract] [Full text]

Haploview: Visualization and Analysis of SNP Genotype Data
Jeffrey C. Barrett
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.ip71 [Abstract] [Full text]

Position-Based Clustering of Microarray Expression Data
Christopher Faulk and Joomyeong Kim
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5280 [Abstract] [Full text]

Assessing Significance in Genetic Association Studies
Mark J. Daly
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top58 [Abstract] [Full text]