Computational Biology

Using Hidden Markov Models to Align Multiple Sequences
David W. Mount
CSH Protocols; 2009; doi:10.1101/pdb.top41 [Abstract] [Full text]

Using Progressive Methods for Global Multiple Sequence Alignment
David W. Mount
CSH Protocols; 2009; doi:10.1101/pdb.top43 [Abstract] [Full text]

Using Iterative Methods for Global Multiple Sequence Alignment
David W. Mount
CSH Protocols; 2009; doi:10.1101/pdb.top44 [Abstract] [Full text]

Using Multiple Sequence Alignment Editors and Formatters
David W. Mount
CSH Protocols; 2009; doi:10.1101/pdb.top45 [Abstract] [Full text]

Comparing Programs and Methods to Use for Global Multiple Sequence Alignment
David W. Mount
CSH Protocols; 2009; doi:10.1101/pdb.ip61 [Abstract] [Full text]

Use of Fluorescence In Situ Hybridization and the daime Image Analysis Program for the Cultivation-Independent Quantification of Microorganisms in Environmental and Medical Samples
Holger Daims
CSH Protocols; 2009; doi:10.1101/pdb.prot5253 [Abstract] [Full text]

Selection and Evaluation of Tag-SNPs Using Tagger and HapMap
Paul I.W. de Bakker
CSH Protocols; 2009; doi:10.1101/pdb.ip67 [Abstract] [Full text]

Computational Docking of Biomolecular Complexes with AutoDock
David S. Goodsell
CSH Protocols; 2009; doi:10.1101/pdb.prot5200 [Abstract] [Full text]

Browsing HapMap Data Using the Genome Browser
Albert Vernon Smith
CSH Protocols; 2008; doi:10.1101/pdb.prot5023 [Abstract] [Full text]

Generating HapMap Data Text Reports Using the Genome Browser
Albert Vernon Smith
CSH Protocols; 2008; doi:10.1101/pdb.prot5024 [Abstract] [Full text]