DNA Sequencing

DNase-seq: A High-Resolution Technique for Mapping Active Gene Regulatory Elements across the Genome from Mammalian Cells
Lingyun Song and Gregory E. Crawford
Cold Spring Harb Protoc; 2010; doi:10.1101/pdb.prot5384 [Abstract] [Full text]

Laboratory Methods for High-Throughput Genotyping
Howard J. Edenberg and Yunlong Liu
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top62 [Abstract] [Full text]

Nested Patch PCR for Highly Multiplexed Amplification of Genomic Loci
Katherine E. Varley and Robi D. Mitra
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5252 [Abstract] [Full text]

Native Chromatin Preparation and Illumina/Solexa Library Construction
Suresh Cuddapah, Artem Barski, Kairong Cui, Dustin E. Schones, Zhibin Wang, Gang Wei, and Keji Zhao
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5237 [Abstract] [Full text]

Recovery of DNA Sequences Flanking P-Element Insertions in Drosophila: Inverse PCR and Plasmid Rescue
Audrey M. Huang, E. Jay Rehm, and Gerald M. Rubin
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5199 [Abstract] [Full text]

DNA Methylation Analysis of Human Imprinted Loci by Bisulfite Genomic Sequencing
Vanessa T. Angeles and Renee A. Reijo Pera
Cold Spring Harb Protoc; 2008; doi:10.1101/pdb.prot5046 [Abstract] [Full text]

Whole Genome Amplification by T7-Based Linear Amplification of DNA (TLAD): Overview
Chih Long Liu, Bradley E. Bernstein, and Stuart L. Schreiber
Cold Spring Harb Protoc; 2008; doi:10.1101/pdb.top42 [Abstract] [Full text]

Whole Genome Amplification by T7-Based Linear Amplification of DNA (TLAD): I. CIP Treatment of Samples and Tailing Reaction with Terminal Transferase
Chih Long Liu, Bradley E. Bernstein, and Stuart L. Schreiber
Cold Spring Harb Protoc; 2008; doi:10.1101/pdb.prot5002 [Abstract] [Full text]

Whole Genome Amplification by T7-Based Linear Amplification of DNA (TLAD): II. Second-Strand Synthesis and In Vitro Transcription
Chih Long Liu, Bradley E. Bernstein, and Stuart L. Schreiber
Cold Spring Harb Protoc; 2008; doi:10.1101/pdb.prot5003 [Abstract] [Full text]

Whole Genome Amplification by T7-Based Linear Amplification of DNA (TLAD): III. Sample Purification
Chih Long Liu, Bradley E. Bernstein, and Stuart L. Schreiber
Cold Spring Harb Protoc; 2008; doi:10.1101/pdb.prot5004 [Abstract] [Full text]