Polymerase Chain Reaction (PCR)

Purification of Genomic DNA Extracted from Environmental Sources for Use in a Polymerase Chain Reaction
Molli M. Newman, Jack W. Feminella, and Mark R. Liles
Cold Spring Harb Protoc; 2010; doi:10.1101/pdb.prot5383 [Abstract] [Full text]

Genome-Wide Analysis of DNA Synthesis by BrdU Immunoprecipitation on Tiling Microarrays (BrdU-IP-chip) in Saccharomyces cerevisiae
Christopher J. Viggiani, Simon R.V. Knott, and Oscar M. Aparicio
Cold Spring Harb Protoc; 2010; doi:10.1101/pdb.prot5385 [Abstract] [Full text]

Amplification of Bisulfite-Converted DNA for Genome-Wide DNA Methylation Profiling
Jon Reinders
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5342 [Abstract] [Full text]

Quantitative Real-Time RT-PCR (qRT-PCR) of Zebrafish Transcripts: Optimization of RNA Extraction, Quality Control Considerations, and Data Analysis
Chuan-Ching Lan, Rongying Tang, Ivone Un San Leong, and Donald R. Love
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5314 [Abstract] [Full text]

In Vivo DNase I, MNase, and Restriction Enzyme Footprinting via Ligation-Mediated Polymerase Chain Reaction (LM-PCR)
Michael F. Carey, Craig L. Peterson, and Stephen T. Smale
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5277 [Abstract] [Full text]

In Vivo Dimethyl Sulfate (DMS) Footprinting via Ligation-Mediated Polymerase Chain Reaction (LM-PCR)
Michael F. Carey, Craig L. Peterson, and Stephen T. Smale
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5278 [Abstract] [Full text]

Chromatin Immunoprecipitation (ChIP)
Michael F. Carey, Craig L. Peterson, and Stephen T. Smale
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5279 [Abstract] [Full text]

Semiquantitative Analysis of Arabidopsis RNA by Reverse Transcription Followed by Noncompetitive PCR
Ji H. Ahn
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5296 [Abstract] [Full text]

Semiquantitative Analysis of Arabidopsis RNA by Reverse Transcription Followed by PCR Using Mimics
Igor Kardailsky
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5297 [Abstract] [Full text]

Strategies for Cloning PCR Products
Peter D’Arpa
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.ip68 [Abstract] [Full text]