DNA Protein Interactions

Dignam and Roeder Nuclear Extract Preparation
Michael F. Carey, Craig L. Peterson, and Stephen T. Smale
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5330 [Abstract] [Full text]

In Vitro Transcription Using HeLa Cell Extracts and Primer Extension
Michael F. Carey, Craig L. Peterson, and Stephen T. Smale
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5331 [Abstract] [Full text]

In Vivo DNase I, MNase, and Restriction Enzyme Footprinting via Ligation-Mediated Polymerase Chain Reaction (LM-PCR)
Michael F. Carey, Craig L. Peterson, and Stephen T. Smale
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5277 [Abstract] [Full text]

In Vivo Dimethyl Sulfate (DMS) Footprinting via Ligation-Mediated Polymerase Chain Reaction (LM-PCR)
Michael F. Carey, Craig L. Peterson, and Stephen T. Smale
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5278 [Abstract] [Full text]

Chromatin Immunoprecipitation (ChIP)
Michael F. Carey, Craig L. Peterson, and Stephen T. Smale
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5279 [Abstract] [Full text]

Native Chromatin Preparation and Illumina/Solexa Library Construction
Suresh Cuddapah, Artem Barski, Kairong Cui, Dustin E. Schones, Zhibin Wang, Gang Wei, and Keji Zhao
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5237 [Abstract] [Full text]

Reconstitution of Nucleosomal Arrays Using Recombinant Drosophila ACF and NAP1
Craig L. Peterson
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5114 [Abstract] [Full text]

Purification of Recombinant Drosophila ACF
Craig L. Peterson
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5115 [Abstract] [Full text]

Purification of Recombinant Drosophila NAP1
Craig L. Peterson
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5116 [Abstract] [Full text]

Enzymatic Synthesis of Multi-Milligram Quantities of Large, Linear DNA Molecules for Structural Studies
David Jeruzalmi
Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5197 [Abstract] [Full text]