Protocol

Genotyping by Oligonucleotide Ligation Assay (OLA)

  1. Stuart J. Macdonald
  1. Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, Kansas 66045, USA
  2. Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas 66045, USA
  1. Corresponding author (sjmac{at}ku.edu)

INTRODUCTION

This protocol describes the oligonucleotide ligation assay (OLA), which uses a set of three oligonucleotides, in combination with a thermostable Taq DNA ligase enzyme, to discriminate single-nucleotide polymorphism (SNP) alleles. Sixteen-plex OLA genotyping reactions are carried out, and allele-specific OLA products are detected on membrane arrays using radiolabeled probes.

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