Table

Table 1. Second-strand synthesis with limiting primer amounts

DNA ng) T7 primer (μL)a NEB Buffer 2 (μL) 5 mM dNTPs (μL) H2O (μL) Tailed DNA (μL) Klenow (μL) Total volume (μL)
>75 0.60 (25 μM) 5.0 2.0 20.4 20.0 2.0 50
50-75 0.30 (25 μM) 2.5 1.0 0.20 20.0 1.0 25
25 0.15 (25 μM) 2.5 1.0 0.35 20.0 1.0 25
10b 1.50 (1 μM) 1.0 0.4 0.20 6.5b 0.4 10
5b 0.75 (1 μM) 1.0 0.4 0.95 6.5b 0.4 10
2.5b 0.38 (1 μM) 1.0 0.4 1.32 6.5b 0.4 10
aUsing limiting amounts of primer is highly advisable when amplifying from very small amounts of starting material. Not only will this decrease the amount of primer-dimer product (see the Troubleshooting section of Whole Genome Amplification by T7-based Linear Amplification of DNA (TLAD): III. Sample Purification [Liu et al. 2008c]), but it may also increase the yield of the desired amplification product. The table gives the single reaction volumes to use for a suggested mass range of starting material.
bThe tailed DNA will need to be dried down in a vacuum centrifuge to the volume indicated for reaction volumes that total 10 μL.

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  1. doi:10.1101/pdb.tab195003 Cold Spring Harb Protoc 2008: pdb.tab195003-

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