Table

Table 1. Online maize resources

Name Feature/resource URL
Arizona Genomics Institute Maize FingerPrinted Contig (FPC) map, BAC contigs, BAC end sequences (BESs) http://www.genome.arizona.edu/fpc/maize
Functional Genomics of Maize Endosperm MuTAIL libraries http://pgir.rutgers.edu/endosperm.info/NewEndosperm.html
Gramene Grass comparative genome resources http://www.gramene.org
iMapDB Integrates maize IBM genetic and physical maps http://www.maizemap.org/iMapDB/iMap.html
Maize Assembled Genomic Islands (MAGI) Assembled gene-enriched and whole genome shotgun genome sample sequences (WGS GSSs) http://magi.plantgenomics.iastate.edu
Maize Fluorescent Protein Tagged Lines Investigative resource for cellular biology in maize; information on fluorescent reporter lines http://maize.tigr.org/cellgenomics/
Maize Genetic Mapping Project Maize IDP and MMP markers http://maize-mapping.plantgenomics.iastate.edu
Maize Genetics and Genomics Database (MaizeGDB) Genetic maps, quantitative trait loci (QTL), molecular markers, EST contigs, gene products, sequences, and much more http://www.maizegdb.org
Maize Genetics Cooperation Stock Center (MGCSC) Seed distributor of maize genetic stocks http://maizecoop.cropsci.uiuc.edu
Maize Genome Sequencing Project Current sequence and annotation of maize genome http://www.maizesequence.org
Maize Targeted Mutagenesis (MTM) Transposon library for targeted selection of gene knockouts http://mtm.cshl.edu
Maize TILLING Project Resource for EMS-mutagenesis for reverse genetics http://genome.purdue.edu/maizetilling
Mu killer Genetic resource for silencing Mu activity http://plantbio.berkeley.edu/~mukiller
Mu Transposon Information Resource Resource for Mutator-based research http://www.mutransposon.org
Panzea--Molecular and Functional Diversity of the Maize Genome Bioinformatic and genomics tools; resources for maize molecular diversity; maize phenotypic variation http://www.panzea.org
Photosynthetic Mutant Library Library of Mu-induced photosynthetic mutants in maize http://pml.uoregon.edu
Plant Genome Database (PlantGDB) Comparative plant genome database; species-specific EST and GSS database, many tools http://www.plantgdb.org
PlantGDB Ac/Ds resources Resource of Ds lines for forward and reverse genetics; Ds/sequenced BAC and annotated gene location files http://www.plantgdb.org/prj/AcDsTagging/#Dissociation
Regional Mutagenesis Utilizing Activator (Ac) in Maize Current map of Ac elements http://bti.cornell.edu/Brutnell_lab2/Projects/Tagging/BMGG_pro_tagging.html
RescueMu Maize Mutant Phenotype Database Phenotype and sequence database for gene discovery using modified transposon RescueMu http://www.maizegdb.org/rescuemu-phenotype.php
Sorghum genome sequence at Phytozome Resources from the Sorghum genome project http://www.phytozome.org/sorghum
TIGR Maize Database TIGR resources for maize genomics and annotation http://maize.tigr.org/
TIGR Rice Genome Sequence Rice genomics and annotation http://rice.tigr.org/
UniformMu Maize Project Resource for reverse genetics using Mu-induced mutagenesis in uniform inbred lines http://uniformmu.uf-genome.org
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  1. doi:10.1101/pdb.tab1emo132 Cold Spring Harb Protoc 2009: pdb.tab1emo132-

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