Recipe

CARD-FISH hybridization buffer

Reagent Amount to add
Blocking solution 2.0 mL
Dextran sulfate 2.0 g
H2O X mL (see below)
Formamide, molecular biology grade (70%) (14 - X) mL (see below)
NaCl (5 M) 3.6 mL
SDS (sodium dodecyl sulfate; 20%, w/v) 20 μL
Tris-Cl (1 M, pH 8.0) 0.4 mL
Mix all reagents in a 50-mL tube. Heat to 40°C-60°C. Shake until the dextran sulfate dissolves completely. Aliquots of the buffer can be stored for several months at -20°C.
The stringency of the buffer can be varied as desired:
% formamide mL formamide (14 - X) mL water (X)
20 4 10
25 5 9
30 6 8
35 7 7
40 8 6
45 9 5
50 10 4
55 11 3
60 12 2
65 13 1
70 14 0
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  1. doi:10.1101/pdb.rec12119 Cold Spring Harb Protoc 2010: pdb.rec12119-

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