Table

Table 1. Inhibitor cocktails used to control proteolysis during protein isolation

Tissue type Protease inhibitors (working concentration) Target protease typea Stock solutionb
Animal tissues AEBSF (0.2 mM) or DCI (0.1 mM) or PMSF (0.2 mM) Serine AEBSF: 20 mM in methanol
DCI: 10 mM in DMSO
PMSF: 200 mM in ethanol or isopropanol
Benzamidine (1 mM) Serine 100 mM
Leupeptin (10 μg/mL) Serine/cysteine 1 mg/mL
Pepstatin (10 μg/mL) Aspartic 5 mg/mL in methanol
Aprotinin (1 μg/mL) Serine 0.1 mg/mL
EDTA or EGTAc (1 mM) Metallo 100 mM
Plant tissues AEBSF (0.2 mM) or DCI (0.1 mM) or PMSF (0.2 mM) Serine AEBSF: 20 mM in methanol
DCI: 10 mM in DMSO
PMSF: 200 mM in ethanol or isopropanol
Chymostatin (20 μg/mL) Serine/cysteine 1 mg/mL in DMSO
EDTA or EGTAc (1 mM) Metallo 100 mM
Yeasts and fungi AEBSF (0.2 mM) or DCI (0.1 mM) or PMSF (0.2 mM) Serine AEBSF: 20 mM in methanol
DCI: 10 mM in DMSO
PMSF: 200 mM in ethanol or isopropanol
Pepstatin (15 μg/mL) Aspartic 5 mg/mL in methanol
1,10-phenanthroline (5 mM) Metallo 1 M in ethanol
Bacteria AEBSF (0.2 mM) or DCI (0.1 mM) or PMSF (0.2 mM) Serine AEBSF: 20 mM in methanol
DCI: 10 mM in DMSO
PMSF: 200 mM in ethanol or isopropanol
EDTA or EGTAc (1 mM) Metallo 100 mM
Adapted from North (1989).
Abbreviations: AEBSF: 4-(2-aminoethyl)-benzenesulfonyl fluoride; DCI: 3,4-dichloroisocoumarin; DMSO: dimethyl sulfoxide; EDTA: ethylenediamine tetraacetic acid; EGTA: ethylene glycol bis(β-aminoethyl ether) N,N,N′,N′-tetraacetic acid; PMSF: phenylmethylsulfonyl fluoride.
Mr values of inhibitors: 1,10-phenanthroline: 198; AEBSF: 240; aprotinin: 6500; benzamidine hydrochloride: 157; chymostatin: 605; DCI: 215; EDTA (disodium salt, dihydrate): 372; leupeptin: 427; pepstatin: 686; PMSF: 174.
aFor a review of proteolytic enzymes, see Neurath (1989) and Perlmann and Lorand (1970).
bAqueous solution unless otherwise indicated.
cAn efficient chelator of divalent metal cations other than Mg2+ (for which it has a 103-fold lower affinity) (Gegenheimer 1990).
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  1. doi:10.1101/pdb.tab195455 Cold Spring Harb Protoc 2010: pdb.tab195455-

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