Table 2.

Caspase substrate databases and substrate prediction servers

Name URL Laboratory Substrate number Species covered Reference
CASBAH http://bioinf.gen.tcd.ie/casbah/ Seamus Martin 777 H, M, R, A, D, C, V Luthi and Martin 2007
CASVM http://www.casbase.org/casvm/index.html Shoba Ranganathan 272 H, V Wee et al. 2007
CasCleave http://sunflower.kuicr.kyoto-u.ac.jp/~sjn/Cascleave/ Jiangning Song 370 Song et al. 2010
CasPredictora http://icb.usp.br/~farmaco/Jose/CaSpredictorfiles Jose Ernesto Belizario 160 Garay-Malpartida et al. 2005
PMAP-CutDBb http://www.proteolysis.org/proteases/ Jeffrey Smith H, M, R, A, D, C Igarashi et al. 2009
MEROPSb http://merops.sanger.ac.uk/index.shtml Neil Rawlings & Alan Barret H, M, R, A, D, C Rawlings et al. 2012

  • aDatabase closed, contact J.E. Belizario for further information.

  • bA large protease and substrate database with large amounts of information on caspases and substrates from many species.

  • H, human; M, mouse; R, rat; A, Arabidopsis; D, Drosophila; C, C. elegans; V, virus

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