Table 2.

An overview of minimalist libraries based on the 4D5 framework

Library Valency Frame work Diversification scheme Observed maximum KD (nM) Reference(s)
L3 H1 H2 H3
Lib-scFv Mono 4D5 Degenerate Degenerate DVK 100 Sidhu et al. 2004
Lib-scFv2 Bi Degenerate Degenerate DVK >100
Lib 1-Fab Mono Degenerate Degenerate DVK 200 Lee et al. 2004b
Lib 1-Fab’-zip Bi Degenerate Degenerate DVK 41 Lee et al. 2004b
Lib 2-Fab Mono Degenerate Degenerate DVK 0.6 Lee et al. 2004a
Lib 2-Fab Mono Degenerate Degenerate NVT NA Lee et al. 2004a
Lib 2-Fab Mono Degenerate Degenerate NNS NA Lee et al. 2004a
Fab'-zip Bi Degenerate tetranomial Degenerate tetranomial Degenerate tetranomiala >10,000 Fellouse et al. 2004
Library A Bi YS YS YSa >200 Fellouse et al. 2005
Library B Bi YS YS YS YSa 60 Fellouse et al. 2005, 2006
Library C Bi YSa,b YSb YSb Degenerate tetranomiala,b 1.6
Library D Bi Tailored Y/S/G + 19/20a,b YSb YSb Tailored Y/S/G + 19/20a,b 4.4 Fellouse et al. 2007
YS Bi YS YS YS YSa ND Birtalan et al. 2008
Y/S/R Bi YS YS YS Trinomial Y/S/Ra 3.1
Y/S/G Bi YS YS YS Trinomial Y/S/Ga 0.3
Y/S/G/R Bi YS YS YS Tetranomial Y/S/G/Ra 4.9
Library F Bi Tailored Y/S/G + 19/20a,b YSb YSb Tailored Y/S/G + 19/20a,b 0.7 Persson et al. 2013
  • (Fab) Antigen-binding fragment.

  • aIntroduction of length diversity.

  • bThe restricted diversification of nonparatope residues.

This Article

  1. Cold Spring Harb Protoc 2025: pdb.over107759-