Protocol

Analyzing Microarray Data

  1. Zhiping Weng

Abstract

Because there is no widely used software for analyzing RNA-seq data that has a graphical user interface, this protocol provides an example of analyzing microarray data using Babelomics. This analysis entails performing quantile normalization and then detecting differentially expressed genes associated with the transgenesis of a human oncogene c-Myc in mice. Finally, hierarchical clustering is performed on the differentially expressed genes using the Cluster program, and the results are visualized using TreeView.

Footnotes

  • From the Molecular Cloning collection, edited by Michael R. Green and Joseph Sambrook.

No Related Web Pages

This Article

  1. Published in Advance August 29, 2016, doi: 10.1101/pdb.prot093112 Cold Spring Harb Protoc © 2017 Cold Spring Harbor Laboratory Press
  1. » Abstract
  2. Full Text (PDF)
  3. All Versions of this Article:
    1. pdb.prot093112v1
    2. 2017/3/pdb.prot093112 most recent

Article Category

  1. Protocol

Personal Folder

  1. Save to Personal Folders

Updates/Comments

  1. Submit Updates/Comments
  2. No Updates/Comments published
  3. Alert me when Updates/Comments are published

Related Content

  1. Related Web Pages

Share

Current Issue

  1. April 2026, 2026 (4)
  1. Current Issue