Table of Contents

November 2009; 2009 (11)

Emerging Model Organisms

  • The Hawaiian Bobtail Squid (Euprymna scolopes): A Model to Study the Molecular Basis of Eukaryote-Prokaryote Mutualism and the Development and Evolution of Morphological Novelties in Cephalopods

    • Patricia N. Lee,
    • Margaret J. McFall-Ngai,
    • Patrick Callaerts,
    • and H. Gert de Couet
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.emo135

  • True Yams (Dioscorea): A Biological and Evolutionary Link between Eudicots and Grasses

    • Hodeba D. Mignouna,
    • Mathew M. Abang,
    • Robert Asiedu,
    • and R. Geeta
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.emo136

Topic Introduction

  • Assessing Human Variation Data for Signatures of Natural Selection

    • Mike Bamshad and
    • J. Claiborne Stephens
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top61

  • Laboratory Methods for High-Throughput Genotyping

    • Howard J. Edenberg and
    • Yunlong Liu
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top62

Information Panels

  • The Embryonic Development of the Hawaiian Bobtail Squid (Euprymna scolopes)

    • Patricia N. Lee,
    • Patrick Callaerts,
    • and H. Gert de Couet
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.ip77

Protocols

  • Labeling Pinocytotic Vesicles and Cytoplasm with Fluorescent Dextrans or Ficolls for Imaging

    • Brad Chazotte
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot4951

  • Phenotypic Analysis of Arabidopsis Mutants: Root Elongation under Salt/Hormone-Induced Stress

    • Byeong-ha Lee and
    • Jian-Kang Zhu
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot4968

  • Preparation of Soluble GST Fusion Proteins

    • Ilaria Rebay and
    • Richard G. Fehon
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot4996

  • Preparation of Insoluble GST Fusion Proteins

    • Ilaria Rebay and
    • Richard G. Fehon
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot4997

  • Imaging Synaptogenesis by Measuring Accumulation of Synaptic Proteins

    • Camin Dean and
    • Peter Scheiffele
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5315

  • Imaging Action Potentials with Calcium Indicators

    • Jason N. MacLean and
    • Rafael Yuste
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5316

  • Indirect Immunofluorescence Labeling in the Yeast Saccharomyces cerevisiae

    • Pamela Silver
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5317

  • Bimolecular Affinity Purification (BAP): Tandem Affinity Purification Using Two Protein Baits

    • Gabriel N. Maine,
    • Nathan Gluck,
    • Iram W. Zaidi,
    • and Ezra Burstein
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5318

  • Preparation of Genomic DNA from Hawaiian Bobtail Squid (Euprymna scolopes) Tissue by Cesium Chloride Gradient Centrifugation

    • Patricia N. Lee,
    • Margaret J. McFall-Ngai,
    • Patrick Callaerts,
    • and H. Gert de Couet
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5319

  • Confocal Immunocytochemistry of Embryonic and Juvenile Hawaiian Bobtail Squid (Euprymna scolopes) Tissues

    • Patricia N. Lee,
    • Margaret J. McFall-Ngai,
    • Patrick Callaerts,
    • and H. Gert de Couet
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5320

  • Whole-Mount In Situ Hybridization of Hawaiian Bobtail Squid (Euprymna scolopes) Embryos with DIG-Labeled Riboprobes: I. DNA Template Preparation and In Vitro Transcription of Riboprobes

    • Patricia N. Lee,
    • Margaret J. McFall-Ngai,
    • Patrick Callaerts,
    • and H. Gert de Couet
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5321

  • Whole-Mount In Situ Hybridization of Hawaiian Bobtail Squid (Euprymna scolopes) Embryos with DIG-Labeled Riboprobes: II. Embryo Preparation, Hybridization, Washes, and Immunohistochemistry

    • Patricia N. Lee,
    • Margaret J. McFall-Ngai,
    • Patrick Callaerts,
    • and H. Gert de Couet
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5322

  • Culture of Hawaiian Bobtail Squid (Euprymna scolopes) Embryos and Observation of Normal Development

    • Patricia N. Lee,
    • Patrick Callaerts,
    • and H. Gert de Couet
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5323

  • Yam (Dioscorea) Husbandry: Cultivating Yams in the Field or Greenhouse

    • Hodeba D. Mignouna,
    • Mathew M. Abang,
    • Robert Asiedu,
    • and R. Geeta
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5324

  • Culturing Meristematic Tissue and Node Cuttings from Yams (Dioscorea)

    • Hodeba D. Mignouna,
    • Mathew M. Abang,
    • Robert Asiedu,
    • and R. Geeta
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5325

  • Post-Flask Management of Yam (Dioscorea) Plantlets

    • Hodeba D. Mignouna,
    • Mathew M. Abang,
    • Robert Asiedu,
    • and R. Geeta
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5326

  • Producing Yam (Dioscorea) Seeds through Controlled Crosses

    • Hodeba D. Mignouna,
    • Mathew M. Abang,
    • Robert Asiedu,
    • and R. Geeta
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5327

  • Extraction of DNA from Yam (Dioscorea) Leaves

    • Hodeba D. Mignouna,
    • Mathew M. Abang,
    • Robert Asiedu,
    • and R. Geeta
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5328

  • Nuclear Run-On Assay

    • Stephen T. Smale
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5329
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This Issue

November 2009; 2009 (11)
Cover
  1. Emerging Model Organisms
  2. Topic Introduction
  3. Information Panels
  4. Protocols

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