Table

Table 5. Inhibitor cocktails used to control proteolysis during protein isolation

Tissue type Protease inhibitors (working concentration) Target protease typea Stock solutionb
Animal tissues AEBSF (0.2 mM) (or DCI [0.1 mM] or PMSF [0.2 mM]) Serine 20 mM in methanol (DCI: 10 mM in DMSO; PMSF: 200 mM in ethanol or isopropanol)
Benzamidine (1 mM) Serine 100 mM
Leupeptin (10 μg/mL) Serine/cysteine 1 mg/mL
Pepstatin (10 μg/mL) Aspartic 5 mg/mL in methanol
Aprotinin (trasylol) (1 μg/mL) Serine 0.1 mg/mL
EDTA or EGTAc (1 mM) Metallo 100 mM
Plant tissues AEBSF (0.2 mM) (or DCI [0.1 mM] or PMSF [0.2 mM]) Serine 20 mM in methanol (DCI: 10 mM in DMSO; PMSF: 200 mM in ethanol or isopropanol)
Chymostatin (20 μg/mL) Serine/cysteine 1 mg/mL in DMSO
EDTA or EGTAc (1 mM) Metallo 100 mM
Yeasts and fungi AEBSF (0.2 mM) (or DCI [0.1 mM] or PMSF [0.2 mM]) Serine 20 mM in methanol (DCI: 10 mM in DMSO; PMSF: 200 mM in ethanol or isopropanol)
Pepstatin (15 μg/mL) Aspartic 5 mg/mL in methanol
1,10-phenanthroline (5 mM) Metallo 1 M in ethanol
Bacteria AEBSF (0.2 mM) (or DCI [0.1 mM] or PMSF [0.2 mM]) Serine 20 mM in methanol (DCI: 10 mM in DMSO; PMSF: 200 mM in ethanol or isopropanol)
EDTA or EGTAc (1 mM) Metallo 100 mM
(Reprinted from Simpson 2003; adapted from North 1989.)
Abbreviations: (AEBSF) 4-(2-aminoethyl)-benzenesulfonylfluoride; (DCI) 3,4-dichloroisocoumarin; (DMSO) dimethylsulfoxide; (EDTA) ethylenediamine tetraacetic acid; (EGTA) ethylene glycol bis (β-aminoethyl ether) N,N,N’,N’-tetraacetic acid; (PMSF) phenylmethylsulfonyl fluoride.
Mr values of inhibitors: AEBSF (240); PMSF (174); DCI (215); EDTA (disodium salt, dihydrate) (372); benzamidine (hydrochloride) (157); leupeptin (427); pepstatin (686); aprotinin (6500); chymostatin (605); 1,10-phenanthroline (198).
aFor a review of proteolytic enzymes, see Perlmann and Lorand (1970); Neurath (1989).
bAqueous solution unless otherwise indicated.
cAn efficient chelator of divalent metal cations other than Mg2+ (for which it has a 103-fold lower affinity) (Gegenheimer 1990).
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  1. doi:10.1101/pdb.tab5top79 Cold Spring Harb Protoc 2010: pdb.tab5top79-

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