Table of Contents

December 2009; 2009 (12)

Emerging Model Organisms

  • The Tammar Wallaby, Macropus eugenii: A Model Kangaroo for the Study of Developmental and Reproductive Biology

    • Danielle Hickford,
    • Stephen Frankenberg,
    • and Marilyn B. Renfree
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.emo137

  • The Sea Squirt Ciona intestinalis

    • Lionel Christiaen,
    • Eileen Wagner,
    • Weiyang Shi,
    • and Michael Levine
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.emo138

Topic Introductions

  • Fluorescent Protein Tracking and Detection: Fluorescent Protein Structure and Color Variants

    • Mark A. Rizzo,
    • Michael W. Davidson,
    • and David W. Piston
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top63

  • Fluorescent Protein Tracking and Detection: Applications Using Fluorescent Proteins in Living Cells

    • Mark A. Rizzo,
    • Michael W. Davidson,
    • and David W. Piston
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top64

  • Computational Image Analysis of Cellular Dynamics: A Case Study Based on Particle Tracking

    • Khuloud Jaqaman and
    • Gaudenz Danuser
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top65

  • Genome-Wide Association Studies

    • Ammar Al-Chalabi
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top66

Protocols

  • Dignam and Roeder Nuclear Extract Preparation

    • Michael F. Carey,
    • Craig L. Peterson,
    • and Stephen T. Smale
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5330

  • In Vitro Transcription Using HeLa Cell Extracts and Primer Extension

    • Michael F. Carey,
    • Craig L. Peterson,
    • and Stephen T. Smale
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5331

  • Working with Tammar Wallabies (Macropus eugenii)

    • Danielle Hickford,
    • Stephen Frankenberg,
    • and Marilyn B. Renfree
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5332

  • Performing Surgery on Tammar Wallaby (Macropus eugenii) Adults

    • Danielle Hickford,
    • Stephen Frankenberg,
    • and Marilyn B. Renfree
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5333

  • Surgery on Tammar Wallaby (Macropus eugenii) Pouch Young

    • Danielle Hickford,
    • Stephen Frankenberg,
    • and Marilyn B. Renfree
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5334

  • Collection, Handling, Fixation, and Processing of Tammar Wallaby (Macropus eugenii) Embryos

    • Danielle Hickford,
    • Stephen Frankenberg,
    • and Marilyn B. Renfree
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5335

  • Culturing Tammar Wallaby (Macropus eugenii) Pouch Young Gonads

    • Danielle Hickford,
    • Stephen Frankenberg,
    • and Marilyn B. Renfree
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5336

  • Culturing Tammar Wallaby (Macropus eugenii) Peri-gastrulation Stage Embryos

    • Danielle Hickford,
    • Stephen Frankenberg,
    • and Marilyn B. Renfree
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5337

  • Immunohistochemical Staining of Sectioned Tammar Wallaby (Macropus eugenii) Tissue

    • Danielle Hickford,
    • Stephen Frankenberg,
    • and Marilyn B. Renfree
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5338

  • Whole-Mount Immunohistochemical Staining of Tammar Wallaby (Macropus eugenii) Cleavage Stages and Blastocysts

    • Danielle Hickford,
    • Stephen Frankenberg,
    • and Marilyn B. Renfree
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5339

  • Whole-Mount Immunohistochemical Staining of Tammar Wallaby (Macropus eugenii) Peri-gastrulation Embryos

    • Danielle Hickford,
    • Stephen Frankenberg,
    • and Marilyn B. Renfree
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5340

  • Analyzing Microorganisms in Environmental Samples Using Stable Isotope Probing with H218O

    • Egbert Schwartz
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5341

  • Amplification of Bisulfite-Converted DNA for Genome-Wide DNA Methylation Profiling

    • Jon Reinders
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5342

  • Biarsenical Labeling of Tetracysteine-Tagged Proteins for Tracking Existing and Newly Synthesized Pools of Proteins

    • Asit K. Pattnaik and
    • Debasis Panda
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5343

  • Isolation of Sea Squirt (Ciona) Gametes, Fertilization, Dechorionation, and Development

    • Lionel Christiaen,
    • Eileen Wagner,
    • Weiyang Shi,
    • and Michael Levine
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5344

  • Electroporation of Transgenic DNAs in the Sea Squirt Ciona

    • Lionel Christiaen,
    • Eileen Wagner,
    • Weiyang Shi,
    • and Michael Levine
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5345

  • X-gal Staining of Electroporated Sea Squirt (Ciona) Embryos

    • Lionel Christiaen,
    • Eileen Wagner,
    • Weiyang Shi,
    • and Michael Levine
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5346

  • Microinjection of Morpholino Oligos and RNAs in Sea Squirt (Ciona) Embryos

    • Lionel Christiaen,
    • Eileen Wagner,
    • Weiyang Shi,
    • and Michael Levine
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5347

  • Whole-Mount In Situ Hybridization on Sea Squirt (Ciona intestinalis) Embryos

    • Lionel Christiaen,
    • Eileen Wagner,
    • Weiyang Shi,
    • and Michael Levine
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5348

  • Isolation of Individual Cells and Tissues from Electroporated Sea Squirt (Ciona) Embryos by Fluorescence-Activated Cell Sorting (FACS)

    • Lionel Christiaen,
    • Eileen Wagner,
    • Weiyang Shi,
    • and Michael Levine
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5349
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This Issue

December 2009; 2009 (12)
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  1. Emerging Model Organisms
  2. Topic Introductions
  3. Protocols

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