Table of Contents

July 2009; 2009 (7)

Emerging Model Organisms

  • The Painted Turtle, Chrysemys picta: A Model System for Vertebrate Evolution, Ecology, and Human Health

    • Nicole Valenzuela
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.emo124

  • Ants (Formicidae): Models for Social Complexity

    • Chris R. Smith,
    • Adam Dolezal,
    • Dorit Eliyahu,
    • C. Tate Holbrook,
    • and Jürgen Gadau
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.emo125

Topic Introductions

  • Using Hidden Markov Models to Align Multiple Sequences

    • David W. Mount
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top41

  • Using Progressive Methods for Global Multiple Sequence Alignment

    • David W. Mount
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top43

  • Using Iterative Methods for Global Multiple Sequence Alignment

    • David W. Mount
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top44

  • Using Multiple Sequence Alignment Editors and Formatters

    • David W. Mount
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top45

  • Indicators Based on Fluorescence Resonance Energy Transfer (FRET)

    • Roger Y. Tsien
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.top57

Information Panel

  • Comparing Programs and Methods to Use for Global Multiple Sequence Alignment

    • David W. Mount
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.ip61

Protocols

  • Phenotypic Analysis of Arabidopsis Mutants: Bacterial Pathogens

    • Detlef Weigel and
    • Jane Glazebrook
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot4983

  • Egg Incubation and Collection of Painted Turtle Embryos

    • Nicole Valenzuela
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5238

  • Collecting Live Ant Specimens (Colony Sampling)

    • Chris R. Smith and
    • Walter R. Tschinkel
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5239

  • Marking Individual Ants for Behavioral Sampling in a Laboratory Colony

    • C. Tate Holbrook
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5240

  • Ecological Sampling of Ants: Competition and Biodiversity

    • Chris R. Smith
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5241

  • Stable Isotope and Elemental Analysis in Ants

    • Chris R. Smith and
    • Chadwick V. Tillberg
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5242

  • Ant Fat Extraction with a Soxhlet Extractor

    • Chris R. Smith and
    • Walter R. Tschinkel
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5243

  • General Dissection of Female Ant Reproductive System and Brain

    • Adam Dolezal and
    • Colin Brent
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5244

  • DNA Isolation from Ants

    • Jürgen Gadau
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5245

  • Juvenile Hormone Extraction, Purification, and Quantification in Ants

    • Colin Brent and
    • Adam Dolezal
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5246

  • Ant Ecdysteroid Extraction and Radioimmunoassay

    • Colin Brent and
    • Adam Dolezal
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5247

  • Radiochemical Assay of Juvenile Hormone Biosynthesis Rate in Ants

    • Colin Brent and
    • Adam Dolezal
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5248

  • GC-MS for Characterization and Identification of Ant Semiochemicals

    • Dorit Eliyahu
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5249

  • In Situ Hybridization on Ant Ovaries and Embryos

    • Abderrahman Khila and
    • Ehab Abouheif
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5250

  • Phase-Unknown Linkage Mapping in Ants

    • Jürgen Gadau
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5251

  • Nested Patch PCR for Highly Multiplexed Amplification of Genomic Loci

    • Katherine E. Varley and
    • Robi D. Mitra
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5252

  • Use of Fluorescence In Situ Hybridization and the daime Image Analysis Program for the Cultivation-Independent Quantification of Microorganisms in Environmental and Medical Samples

    • Holger Daims
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5253

  • Preparation of High-Molecular-Weight DNA from Drosophila Embryos

    • Gary H. Karpen
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5254

  • Adhesive Micropatterns for Cells: A Microcontact Printing Protocol

    • Manuel Théry and
    • Matthieu Piel
    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5255
|

This Issue

July 2009; 2009 (7)
Cover
  1. Emerging Model Organisms
  2. Topic Introductions
  3. Information Panel
  4. Protocols

Find articles in this issue containing these words:

Current Issue

  1. January 2026, 2026 (1)
  1. Current Issue